Marine Biology Station - Morska Biološka Postaja Piran
           


First six month management report (March-August 2005)

PARTNER: NIB.MBS

 

WP0: Project management
Major Work package aims:


Intergovernmental Oceanographic Commission - IOC, UNESCO

Italian Ministry for the Environment and Territory

1.
Facilitating contractual agreements at the start of Project;
2.
Defining Project reporting mechanisms and scheduling meetings
3.
Preparing a plan for the dissemination of project results and implement it.

Task 0.2: Project reporting and meetings

The Project will produce six month management and scientific reports. A kick-off meeting is foreseen as well as general workshops between all Project participants. The technical meetings needed in several Tasks will be coordinated directly by each partners.
Responsible: UNESCO-IOC
Participants: All the partner Institutions
Duration: 0 - 30 months
Deliverable within 18 months: Kick-off meeting, six months management reports, final scientific report for the first 18 months, technical meeting reports

NIB.MBS

NIB.MBS will participate at the opening meetings, delivering management reports every six months, together with the final scientific report. NIB.MBS will also write and co-write reports regarding technical meetings in which it will take part.

WP1: Enhancement of ADRICOSM observational and modeling network

Major Work package aims:

1.
Insert the entering countries with an active role in ADRICOSM observational and modeling activities;
2.
Continue and improve the satellite data analysis system for SST, color and scatterometer winds;
3.
Continuation and improvement of the VOS XBT monitoring system;
4.
Collect hydrological seasonal data sets in entering countries coastal areas;
5.
Add new physical and key biochemical observations in established ADRICOSM coastal areas for training purposes;
6.
Atmospheric forcing studies to increase the ocean forecast reliability
7.
Continuation of the ADRICOSM forecasting activities

Task 1.5 Introduction of new measurements in existing observational areas for training purposes

Subtask 1.5.1: Add new ADCP on board of two of the four major ADRICOSM CTD network vessels.

A new VM-ADCP system for a 10-25 m long ship to be used in shallow waters (10-50 m) will be implemented in two of the four ADRICOSM coastal areas networks and new entry partners will be participating to enforce training for future implementations in other coastal areas.
Small ships roll is large, compromising therefore ADCP data quality. The problems related to the installation of such device on each of the five ADRICOSM ships involved in the coastal areas networks will be assessed and the necessary developments carried out.
After the initial problem assessment phase the combined collection of CTD and ADCP data will be carried out at monthly time scales in the four traditional CTD coastal monitoring networks of ADRICOSM.
Responsible: OGS
Participants: UNESCO-IOC, ARPA.Daphne, NIB.MBS, RBI.CMR, IOF, HEIS, UNIBE, IBM, IE
Duration: 0-18 months
Deliverable within 18 months: installation and test of the system; training courses on ADCP monitoring. CTD and ADCP data
collection

Fig. 1. ADCP cruise tracks (red line) between the lighthouses (blue dots) at the southern (Piran, Slovenia) and the northern (Grado, Italy) sides of the Gulf of Trieste. Rectangles represent CTD stations at which LBM performed vertical CTD profiles during the 25 h ACDP cruise.

NIB.MBS

NIB.MBS planned and organized three ADCP and CTD cruises to evaluate currents and the density field at the entrance of the Gulf of Trieste. Cruise campaigns were conducted with a vessel 12 m in length during clement weather (sea state less than three). Cruises at the entrance of the Gulf were performed by crossing the Gulf along the idealized line that connects the lighthouse of Piran (450 31.802' N, 130 33.803' E) at the southern part of the Gulf, with the lighthouse of Grado (450 39.345' N, 130 26.305' E) at the northern part. The distance between these two points is around 18.4 km (Fig. 1) .

The vessel of NIB.MBS moved with a fixed bearing and a speed of six knots. During the cruises, the current-meter of the Nortek AS company (NDP 500 kHz instrument) was mounted at the bow of the vessel, recording currents along straight tracks of the vessel. The vertical dimension of the cells with data of currents is 1 m. While the vessel of NIB.MBS was routing from one lighthouse to another for a period of 25 hours, Italian partners from LBM in Trieste performed CTD measurements (conductivity, temperature and salinity) at 18 locations. Six of the CTD locations lay along an idealized line, each 1.8 nautical mile (nm) apart. Twelve other points were divided into two groups, six on each side of the idealized line. These stations were again separated by 1.8 nm intervals along each row of station and at a distance of 0.9 nm from the idealized line. CTD cruises were performed twice during the 25 hour ADCP cruise, in the morning of the first day and in the morning of the following day. Cruises were performed according to the following schedule:

  • The first 24 hour cruise was conducted on 08 October 2004, when a typical autumn situation was captured. There was an outflow along the Italian coastline and an inflow near the floor along the Slovenian coastline. However, there was also an outflow near the Slovenian coastline through most of the water column, and an inflow at the central part of the entrance to the Gulf. This structure of the inflow/outflow was well in accordance with the results of the numerical model ACOAST-1.2., with which the climatic circulation of the Gulf was studied. First estimates showed that ADCP measurements at the southern side of the Gulf were also in agreement with the measurements that were recorded with a coastal buoy, 2.1 nm offshore Piran in the direction of Grado.
  • The second cruise was undertaken on 07 March 2005, in a typical winter situation (averaged temperature of the sea was around 8°C). Technical difficulties during the survey were experienced this time: the timings between the ADCP and DGPS compass were not synchronized. Nevertheless, we managed to obtain 20 cruise tracks and all data were successfully calibrated by the Nortek NDP software.
  • On 13 June 2005, an ADCP cruise was partially undertaken (2 routes). After a few hours of work, a strong sirocco wind was encountered, raising waves of peak-to-peak range between 1.0-1.5 m. It was impossible to continue the survey.
  • A fourth cruise was undertaken on 29 June 2005. Again, problems with the weather were experienced – in the middle of the survey, a summer storm passed over the cruise track. The vessel was harbored twice until conditions on the sea stabilized, the survey being discontinued twice for a few hours. Nevertheless, 16 cruise tracks were accomplished during 25 h, together with a complete set of CTD data.

Overall, three 25 h ADCP cruises with CTD data were successfully completed. In addition, valuable velocity data were collected during a strong sirocco wind.

After the data files were collected by the ADCP, they were examined in order to filter out erroneous data due to poor signal strength, shorted range, and bad SNR. Nortek AS software was applied for this purpose. Before exporting the data files from a binary format to ASCII, a calibration of the position data with the DGPS-compass device was performed and the data were averaged in intervals (every 10 minutes). In this way, the data were ready to be surveyed with text editor. ‘Matlab’ software was applied for the data analysis and ‘Surfer’ (Golden Software company) software for plotting currents on a vertical plane from Grado to Piran. Current-meter data analysis is divided in four steps:

1.
Each cruise track deviates more or less from the idealized line (almost never for more than 100 m). Therefore, each track was projected along the idealized line, along which joint points of all cruises are defined, in order to unify tracks for the analysis. This means that currents (Northern and Eastern components) from all routes (depending on the cruise) are projected on the idealized route for each route separately.
2.
The topography along the idealized line is obtained by recording cell numbers of the peak of the signal strength (meaning the sea-floor) of the data that were averaged over a horizontal distance of 250 meters. Two cells (corresponding to 2 m depth) near the floor were subtracted in order to remove the data in cells that were ‘polluted’ by the reflection of the signal near the bottom. Then a minimum of two neighboring points around the joint point was chosen for the depth at that point for a single track. The minima of these values of all tracks (about 18 of them during a 25 h cruise) at joint points served as depth values of all tracks. This topography profile was used to limit the number of cells along the idealized track and to blank graphs in Surfer when plots of different routes were made.
3.
The average velocity (Eastern and Northern components) with the standard deviation was calculated for all tracks of one field campaign, for each cell of a length of 250 m and height of 1 m that lay in a vertical plane along the idealized line. Fluctuating velocities were calculated by subtracting average values. These will be analyzed with the harmonic least-squares method in order to subtract the periodic signal of tides (and inertial signal)
4.
From the CTD data (conductivity and salinity), geostrophic currents will be calculated in order to compare them with the average currents of ADCP measurements and to estimate ageostrophic components, after tides are removed from the fluctuating part of velocities.

Subtask 1.5.3: Po river Buoy station

Actually, the Po river Buoy station (figure 1) measures meteorological (wind speed, wind gust and wind direction, air temperature, air pressure, relative humidity and net solar radiation), oceanographic (current speed and 2D current direction) and physic-chemical parameters (water conductivity, temperature, pH, redox, dissolved oxygen, chlorophyll ? and turbidity) at one hour intervals of data acquisition within the first meter water depth.
Responsible: CNR.ISMAR-IGM
Participants: NIB.MBS, IE
Duration: 0 – 18 months
Deliverable within 18 months: set up of the new sensors, excursions for platform maintenance training.

NIB.MBS

NIB.MBS will participate in this subtask as an experienced partner as operators of the Coastal Oceanographic Station Piran (COSP), a dominant part of which is the coastal buoy (http://buoy.mbss.org). It has been operating continuously since 2002, except during periods of annual maintenance (7-14 days a year). The configuration of sensors at the buoy is similar to the one at the Po river buoy (ADCP at the sea-floor, CTD probe at a depth of 2 m, acoustic anemometer at a height of 5 m above sea-level, together with sensors for air temperature and humidity). Here a compass/tilt sensor with GPS receiver is located (Fig. 2).
The instantaneous data of wind and compass, which are received on land, are sampled at intervals of 0.25 s. The data-logger was developed by local experts retrieving data from all sensors, transmitting them via radio link every half hour to the land station at MBS, 5 km from the buoy. At the receiving station, data post-processing with quality control checks is performed on the instantaneous data and on the averaged data, stored in a relational data-base, sent to the web server to update graphs and at the same time, also sent to the Slovenian Agency for the Environment which covers half of the costs for the maintenance. Currently, the new data logger is under development, which will be designed on the basis of internet technology (the buoy will be an intranet node). During the annual maintenance of the buoy, which will take place in September-October 2005, this new data-logger will replace the old one. A new ADCP of the Nortek-AS company (AWAC), which will also measure surface waves, will replace the old one. If the new INTERREG project is accepted, a new coastal buoy will be constructed and a system of underwater video monitoring for periodic underwater snapshots will be designed and installed.

NIB.MBS will participate at meetings related to this subtask and will write the relevant reports. We will also propose a data exchange with the Po river buoy station.

WP3: Data Management system

Major aims:

1.
Implement and develop an efficient data management system for Real Time and historical data sets in the Adriatic;
2.
Organize an Adriatic data management network with expert coastal data centers;
3.
Data rescue for physical and biochemical parameters in new coastal areas of interest;
4.
Develop quality control procedures for coastal and open ocean historical data sets of the region;
5.
Development of GIS for coastal areas;

Fig. 2. Coastal buoy of the Coastal Oceanographic Station Piran.
Task 3.1 Organisation of NRT data management system for the whole Adriatic Sea
  • Establishment of data quality control procedures for NRT CTD and VOS data
  • Add RT time buoy station data management and dissemination
    During ADRICOSM-EXT the analysis of all the data collected in ADRICOSM will be carried out, and also new additional products will be developed:
    -
    protocols and software for data collection, re-sampling at higher vertical resolution, de-spiking, filtering.
    -
    Analysis of the consistency of data collected in ADRICOSM, construction of local climatologies (monthly mean and STD profiles)
    -
    Develop a Q.C. software for coastal data
This activity will foresee the collaboration of all the Institutions involved in data collection in coastal areas (Daphne, LBM, NIB, IOF) and the institutions involved in data management (ENEA and OGS).
Responsible: ENEA.CRAM
Participants: UNIBO.CIRSA, ARPA-Daphne, LBM.TS, OGS, NIB.MBS
Duration: 0 – 18 months
Deliverable within 18 months: data quality control procedures, data dissemination protocols

NIB.MBS

NIB.MBS was active in defining the sampling protocol, quality check of the CTD data and data export in the reduced MedAtlas format. Together with a partner institute LBM in Trieste, we set up a common data base which has been operating since 1991, analyzing data with the objective interpolation method. Joint field operations over the Gulf of Trieste will be continued as much as possible. Presently, we are jointly constructing the database for the local climatology of the Gulf and making the trend analysis of its changes. We will also play an active role in this subtask.

Task 3.2 Organisation of a delayed mode data archiving system for the Adriatic Sea

Creation of a biological meta data base of the Adriatic Sea
Concerning the creation of a biological meta data base of the Adriatic Sea the goal will be the preparation and merge in a biological meta data base of all historical plankton data set that have been collected over the Northern Adriatic during joined research/monitoring projects over the last decades, including the available eastern countries’ data sets.
Responsible: OGS
Participants: ENEA.CRAM, LBM.TS, NIB.MBS, RBI.CMR, IOF
Duration: 0-18 months
Deliverable within 18 months: General inventory of available data in selected Adriatic Sea coastal areas; preliminary procedure for data formatting and validation.

NIB.MBS

NIB.MBS acts as the National Oceanographic Data Centre (NODC) in Slovenia and as such is updating several data banks. One is related to data received from the coastal buoy, another to CTD data collected during cruises with a research vessel, and a third data base is related to chemical parameters (nutrient compounds, oxygen, BOD, etc.) resulting from analysis of the water samples.

WP4: Training and outreach

It is intended that all Partners in the Project will be Participants to these Tasks.

Task 4.1: Workshops and seminars in the field of operational forecasting, ICZM, monitoring, modelling and data assimilation

On the basis of UNESCO-IOC activities ICM and GOOS two workshops will be organized with external expertise to discuss state of the art projects and studies on the subjects.
Responsible: UNESCO-IOC
Duration: 0-18 months
Deliverable within 18 months: First Workshop organized

Task 4.2: Mapping techniques for coastal data sets

Mapping of climatology in the Adriatic and ADRICOSM coastal areas techniques will be described and these techniques will be the arguments of training period for new entry partners.
Responsible: UNIBO-CIRSA
Duration: 0-18 months
Deliverable within 18 months: training course on mapping techniques

Task 4.3: Training course for data management

Training courses for historical and real time data management will be organized.
Responsible: UNESCO-IOC
Duration: 0-18 months
Deliverable within 18 months: training course organized

Task 4.4: Meteo-marine station data management

The work will be organized in the following way:

  • Training programs concerning the management of the meteo-marine station;
  • Training programs concerning the data collection, management and networking;
  • Visiting programs concerning technical visits to meteo-marine stations, informatics and telematic centers
  • Stages to be activated at Italian technical organizations.
Responsible: APAT
Duration: 0-18 months
Deliverable within 18 months: training course organized, visits, stages, learning documentation

Task 4.5 Training in ICSS

The scientific and technical training courses and workshops will deal with the following topics:

  • Modelling of sewer system with MOUSE
  • Modelling of river basin with MIKE11
  • Flow, WQ and rain survey in the integrated system
  • Performance analysis - evaluation of results

Responsible: SGI
Duration: 10-18 months
Deliverable within 18 months: Training courses and workshop.

NIB.MBS

NIB.MBS will participate in workshops, organized by IOC-UNESCO and other partners in the project as much as possible (Tasks 4.1-4.5). We will also take an active part in Tasks 4.2 and 4.3, together with LBM in Trieste.


Last update 09. Setember 2005
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